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R boxplot

From WikiOD

Syntax[edit | edit source]

  • boxplot(x, ...) # generic function
  • boxplot(formula, data = NULL, ..., subset, na.action = NULL) ## S3 method for class 'formula'
  • boxplot(x, ..., range = 1.5, width = NULL, varwidth = FALSE, notch = FALSE, outline = TRUE, names, plot = TRUE, border = par("fg"), col = NULL, log = "", pars = list(boxwex = 0.8, staplewex = 0.5, outwex = 0.5), horizontal = FALSE, add = FALSE, at = NULL) ## Default S3 method

Parameters[edit | edit source]

Parameters Details (source R Documentation)
formula a formula, such as y ~ grp, where y is a numeric vector of data values to be split into groups according to the grouping variable grp (usually a factor).
data a data.frame (or list) from which the variables in formula should be taken.
subset an optional vector specifying a subset of observations to be used for plotting.
na.action a function which indicates what should happen when the data contain NAs. The default is to ignore missing values in either the response or the group.
boxwex a scale factor to be applied to all boxes. When there are only a few groups, the appearance of the plot can be improved by making the boxes narrower.
plot if TRUE (the default) then a boxplot is produced. If not, the summaries which the boxplots are based on are returned.
col if col is non-null it is assumed to contain colors to be used to colour the bodies of the box plots. By default they are in the background colour.

Create a box-and-whisker plot with boxplot() {graphics}[edit | edit source]

This example use the default boxplot() function and the irisdata frame.

> head(iris)
  Sepal.Length Sepal.Width Petal.Length Petal.Width Species
1          5.1         3.5          1.4         0.2  setosa
2          4.9         3.0          1.4         0.2  setosa
3          4.7         3.2          1.3         0.2  setosa
4          4.6         3.1          1.5         0.2  setosa
5          5.0         3.6          1.4         0.2  setosa
6          5.4         3.9          1.7         0.4  setosa

Simple boxplot (Sepal.Length)[edit | edit source]

Create a box-and-whisker graph of a numerical variable

boxplot(iris[,1],xlab="Sepal.Length",ylab="Length(in centemeters)",
           main="Summary Charateristics of Sepal.Length(Iris Data)")

boxplot

Boxplot of sepal length grouped by species[edit | edit source]

Create a boxplot of a numerical variable grouped by a categorical variable

boxplot(Sepal.Length~Species,data = iris)

withcategorical

Bring order[edit | edit source]

To change order of the box in the plot you have to change the order of the categorical variable's levels.

For example if we want to have the order virginica - versicolor - setosa

newSpeciesOrder <- factor(iris$Species, levels=c("virginica","versicolor","setosa"))
boxplot(Sepal.Length~newSpeciesOrder,data = iris)

reorder

Change groups names[edit | edit source]

If you want to specifie a better name to your groups you can use the Names parameter. It take a vector of the size of the levels of categorical variable

boxplot(Sepal.Length~newSpeciesOrder,data = iris,names= c("name1","name2","name3"))

boxplot

Small improvements[edit | edit source]

Color[edit | edit source]

col : add a vector of the size of the levels of categorical variable

boxplot(Sepal.Length~Species,data = iris,col=c("green","yellow","orange"))

withcolor

Proximity of the box[edit | edit source]

boxwex: set the margin between boxes.

Left boxplot(Sepal.Length~Species,data = iris,boxwex = 0.1)

Right boxplot(Sepal.Length~Species,data = iris,boxwex = 1)

changeproximity

See the summaries which the boxplots are based plot[edit | edit source]

FALSE =

To see a summary you have to put the paramater plot to FALSE.

Various results are given

> boxplot(Sepal.Length~newSpeciesOrder,data = iris,plot=FALSE)
$stats #summary of the numerical variable for the 3 groups
     [,1] [,2] [,3]
[1,]  5.6  4.9  4.3 # extreme value 
[2,]  6.2  5.6  4.8 # first quartile limit
[3,]  6.5  5.9  5.0 # median limit
[4,]  6.9  6.3  5.2 # third quartile limit
[5,]  7.9  7.0  5.8 # extreme value

$n #number of observations in each groups
[1] 50 50 50

$conf #extreme value of the notchs
         [,1]     [,2]     [,3]
[1,] 6.343588 5.743588 4.910622
[2,] 6.656412 6.056412 5.089378

$out #extreme value
[1] 4.9

$group #group in which are the extreme value
[1] 1

$names #groups names
[1] "virginica"  "versicolor" "setosa"

Additional boxplot style parameters.[edit | edit source]

Box[edit | edit source]

  • boxlty - box line type
  • boxlwd - box line width
  • boxcol - box line color
  • boxfill - box fill colors

Median[edit | edit source]

  • medlty - median line type ("blank" for no line)
  • medlwd - median line widht
  • medcol - median line color
  • medpch - median point (NA for no symbol)
  • medcex - median point size
  • medbg - median point background color

Whisker[edit | edit source]

  • whisklty - whisker line type
  • whisklwd - whisker line width
  • whiskcol - whisker line color

Staple[edit | edit source]

  • staplelty - staple line type
  • staplelwd - staple line width
  • staplecol - staple line color

Outliers[edit | edit source]

  • outlty - outlier line type ("blank" for no line)
  • outlwd - outlier line width
  • outcol - outlier line color
  • outpch - outlier point type (NA for no symbol)
  • outcex - outlier point size
  • outbg - outlier point background color

Example[edit | edit source]

Default and heavily modified plots side by side

par(mfrow=c(1,2))
# Default
boxplot(Sepal.Length ~ Species, data=iris)
# Modified
boxplot(Sepal.Length ~ Species, data=iris,
        boxlty=2, boxlwd=3, boxfill="cornflowerblue", boxcol="darkblue",
        medlty=2, medlwd=2, medcol="red", medpch=21, medcex=1, medbg="white",
        whisklty=2, whisklwd=3, whiskcol="darkblue",
        staplelty=2, staplelwd=2, staplecol="red",
        outlty=3, outlwd=3, outcol="grey", outpch=NA
        )

boxplot

Credit:Stack_Overflow_Documentation